So as it turned out, one by one the rest of the Organization was killed off by Sora except for Axel who was working as a double-agent more than anything and sacrificed himself so Sora could continue to defeat the others and except for me, for obvious reasons. Sora defeated Xemnas, everything turned out great, end of story.

Except now Xemnas is here, in Luceti. Xemnas is in Luceti and he's reforming the Organization. Everybody's willingly falling back into line except for me and Axel. He's after us to use us to complete whatever plan he's got now.